Diagram and MicroSim Details¶

Total Visual Elements: 36 Diagrams: 8 MicroSims: 28

Chapter 0: Math Prerequisites¶

Total elements: 1

Matrix × Graph Explorer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 5
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 1: Intro To Graphs¶

Total elements: 1

Graph Property Explorer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Apply
UI Elements: 3
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 2: Graph Properties And Features¶

Total elements: 1

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 4
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 3: Link Analysis Pagerank¶

Total elements: 1

PageRank Feedback Loops ¶

Status: Implemented
Type: Diagram
Bloom's Taxonomy: Apply
UI Elements: 5
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Chapter 4: Node Embeddings¶

Total elements: 1

node2vec Biased Random Walk Explorer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Apply
UI Elements: 7
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 5: Label Propagation¶

Total elements: 2

Label Propagation Step-by-Step Simulator ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Analyze
UI Elements: 4
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

SIR Epidemic Dynamics on Network Structures ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Analyze
UI Elements: 5
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 6: Gnn Foundations¶

Total elements: 2

GCN Message Passing Visualizer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 3
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

GNN Message Passing Feedback Dynamics ¶

Status: Implemented
Type: Diagram
Bloom's Taxonomy: Analyze
UI Elements: 4
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Chapter 7: Gnn Design Space¶

Total elements: 2

GAT Attention Weight Visualizer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Apply
UI Elements: 2
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

GNN Design Space Interactive Comparison ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Create
UI Elements: 0
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Chapter 8: Gnn Training¶

Total elements: 1

Over-Smoothing Feedback Loop ¶

Status: Implemented
Type: Diagram
Bloom's Taxonomy: Understand
UI Elements: 5
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Chapter 9: Gnn Theory¶

Total elements: 1

Status: Implemented
Type: Diagram
Bloom's Taxonomy: Apply
UI Elements: 4
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Chapter 10: Powerful Gnns¶

Total elements: 1

GIN vs. GCN Expressiveness MicroSim ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 4
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 11: Graph Transformers¶

Total elements: 1

Graph Transformer Attention Heatmap ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Analyze
UI Elements: 4
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 12: Knowledge Graph Embeddings¶

Total elements: 1

TransE Geometry in 2D ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Apply
UI Elements: 6
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 13: Kg Reasoning¶

Total elements: 1

Query Box Traversal ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Analyze
UI Elements: 5
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 14: Kg Foundation Models¶

Total elements: 1

Cross-KG Structure Transfer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Analyze
UI Elements: 4
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 15: Heterogeneous Graphs¶

Total elements: 1

Typed Node and Edge Explorer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Apply
UI Elements: 6
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 16: Recommender Systems¶

Total elements: 1

User-Item Graph with Multi-Hop Propagation Visualization ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Apply
UI Elements: 3
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 17: Relational Deep Learning¶

Total elements: 1

Relational Schema to Heterogeneous Graph ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 3
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 18: Community Structure¶

Total elements: 2

Girvan-Newman Step-by-Step on the Karate Club Graph ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 3
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Louvain Two-Phase Iteration Explorer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 5
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 19: Subgraph Mining¶

Total elements: 2

Motif Z-Score Explorer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 3
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

SPMiner Order Embedding Space ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 2
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 20: Scaling Gnns¶

Total elements: 1

Neighbor Explosion Causal Loop Diagram ¶

Status: Implemented
Type: Diagram
Bloom's Taxonomy: Analyze
UI Elements: 3
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Chapter 21: Generative Models¶

Total elements: 1

Drug Discovery GNN Pipeline ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 2
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 22: Temporal Graphs¶

Total elements: 1

Temporal Graph Memory Dynamics — Causal Loop Diagram ¶

Status: Implemented
Type: Diagram
Bloom's Taxonomy: Understand
UI Elements: 3
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Chapter 23: Llm Gnn¶

Total elements: 2

LLM+GNN Pipeline Explorer (Full Version)¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Evaluate
UI Elements: 6
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

LLM+GNN Pipeline — Text-to-Prediction ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 4
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 24: Advanced Gnn Topics¶

Total elements: 3

Contrastive Loss Surface Explorer ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Apply
UI Elements: 4
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

DGI vs. Contrastive Learning — Concept Map ¶

Status: Implemented
Type: Diagram
Bloom's Taxonomy: Analyze
UI Elements: 1
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Graph Contrastive Learning — Two-View Pipeline ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Create
UI Elements: 4
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 25: Agents And Graphs¶

Total elements: 2

Agent Graph Reasoning Loop — Causal Loop Diagram ¶

Status: Implemented
Type: Diagram
Bloom's Taxonomy: Apply
UI Elements: 4
Difficulty: Easy
Learning Objective: TODO: Add learning objectives...

Agent Tool-Use Graph — Interactive Planner ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Understand
UI Elements: 2
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...

Chapter 26: Conclusion¶

Total elements: 1

GNN Architecture Family Tree ¶

Status: Implemented
Type: Microsim
Bloom's Taxonomy: Create
UI Elements: 2
Difficulty: Medium
Learning Objective: TODO: Add learning objectives...